pathdb - Comprehensive Database for Pathway Enrichment Analysis
Provides access to large-scale genomics data from the
South Dakota State University's bioinformatics database, a
unified platform for pathway analysis of over 13,000 organisms.
It includes various gene mappings, gene characteristics, and
pathway mapping data from KEGG, GOBP, GOCC, and many more
pathway databases. Also provides various helper functions for
processing RNA-Seq data for differential expression analysis
and pathway enrichment analysis, occasionally sourced from code
from Integrated Differential Expression & Pathway analysis
(iDEP), developed by Ge, S.X., Son, E.W. & Yao, R. (2018)
<doi:10.1186/s12859-018-2486-6>.
