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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "pathdb" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'pathdb: Comprehensive Database for Pathway Enrichment Analysis'
version: 0.1.0
doi: 10.32614/CRAN.package.pathdb
abstract: Provides access to large-scale genomics data from the South Dakota State
  University's bioinformatics database, a unified platform for pathway analysis of
  over 13,000 organisms. It includes various gene mappings, gene characteristics,
  and pathway mapping data from KEGG, GOBP, GOCC, and many more pathway databases.
  Also provides various helper functions for processing RNA-Seq data for differential
  expression analysis and pathway enrichment analysis, occasionally sourced from code
  from Integrated Differential Expression & Pathway analysis (iDEP), developed by
  Ge, S.X., Son, E.W. & Yao, R. (2018) <https://doi.org/10.1186/s12859-018-2486-6>.
authors:
- family-names: Frederick
  given-names: Aidan
  email: Aidan.Frederick@sdstate.edu
repository: https://aidanfred24.r-universe.dev
repository-code: https://github.com/aidanfred24/pathdb
commit: 09c376a4af39c9d60fe434e37971a8754cca6cca
url: https://aidanfred24.github.io/pathdb/
date-released: '2026-06-03'
contact:
- family-names: Frederick
  given-names: Aidan
  email: Aidan.Frederick@sdstate.edu